PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pahal.H01191.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C3H
Protein Properties Length: 683aa    MW: 73162.6 Da    PI: 4.9634
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pahal.H01191.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.52.2e-08476496626
                     -SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                     C+++  +G C +GdrCkF+H+
  Pahal.H01191.1 476 CHNYKNNGMCIRGDRCKFSHV 496
                     ********************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010314.981416443IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-5416441IPR000571Zinc finger, CCCH-type
SMARTSM003560.0038417442IPR000571Zinc finger, CCCH-type
SMARTSM003560.0018445471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.774445472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-5446470IPR000571Zinc finger, CCCH-type
SMARTSM003560.064473497IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.624475498IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.3E-4476495IPR000571Zinc finger, CCCH-type
PfamPF006422.8E-5476496IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MEDALATSPL APPPAPLAAA AVLTRRRSHL DSASYRTLSR LFSHCLHLQP SSREGTAPTE  60
GEPAVANPTG GDSGDSAQVP GGADFDRLKD VEKEAEDAGG PSLQETVSPA REQPAASNPT  120
CDPCESEAPQ RSHDDVDEVV AVESTCGNTG AVVEESGIGA GMVVVEDDAL KLVKACLETT  180
DVDESVEGAL GNDDGQLLLD AMMTNFTGLI DDVGAGVIPV QTCVVSGVEL QDSKASEDLK  240
QSGGGIEDGE PVRNLDRKMN EDGGFEEGEI EGEFQDLDSE ESGDSELVDD DNAEDEKLGG  300
YSVSRGSGAC DHGIQSVNLH SKPGIIGNGH LTLNKDANVR GDEQISVTRA QAVSYDEVVD  360
WNVTPLPDNV ATNPGKKTKR TLTEERKAKK TENKRKKRAQ QRIADGVKRP KLQHVTKPKK  420
PCHFYDHGKC QQGSKCKFSH DFTPTTKSKP CKHFACGSCL KGDDCPYDHE LSKYDCHNYK  480
NNGMCIRGDR CKFSHVMRTT EGTPTQDAKP SDASLAYEKT NRREHVSSQK TPTVHNGEPV  540
TSASTKQQCS ILKNLAGFSI NSQNISDRIP KGVQFLPFDK SGSNLSSPHL DALSIEKPRN  600
ANATQHQYFG GHGAEKQKIS KQNGQESLLD EKNSSNEATM LPFSDPPKAS LPTNSAATSV  660
HTQPEISEAS RILQEFLFGA GS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004969019.10.0PREDICTED: zinc finger CCCH domain-containing protein 7
SwissprotQ657B30.0C3H7_ORYSJ; Zinc finger CCCH domain-containing protein 7
TrEMBLK3XF830.0K3XF83_SETIT; Uncharacterized protein
STRINGSi000552m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88383743